PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019264.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 209aa    MW: 23402.1 Da    PI: 10.7192
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019264.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.7e-1374131155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +    ++ k+ + g ++t+e Aa+a++ a++k++g
  Do019264.1  74 SVYRGVTRHRWTGRFEAHLWDkHCLTAlQNkKKGRQGAYDTEEAAARAYDLAALKYWG 131
                 78*******************777644644466677********************98 PP

2AP231.54.3e-10174208138
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg+fg 
  Do019264.1 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFGM 208
                 89****99**********99966...3.6********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1674140IPR016177DNA-binding domain
PfamPF008471.5E-1074131IPR001471AP2/ERF domain
SMARTSM003803.3E-2275145IPR001471AP2/ERF domain
PROSITE profilePS5103219.54675139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-1475140IPR001471AP2/ERF domain
PRINTSPR003673.4E-67687IPR001471AP2/ERF domain
PRINTSPR003673.4E-6121141IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-5174207IPR016177DNA-binding domain
PfamPF008474.0E-6174208IPR001471AP2/ERF domain
PROSITE profilePS510329.717175209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-4175206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MERSPQPSPS PVSSPPSSSS SSITTEEIPP PRKRRARTQS AKGATADKPK RPRKEAARQS  60
KEDAAAAAAG KRSSVYRGVT RHRWTGRFEA HLWDKHCLTA LQNKKKGRQG AYDTEEAAAR  120
AYDLAALKYW GPETVLNFPA EDYSNEMSEM EGASREEYLA SLRRRSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTFGMD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14854PKRPRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381841e-143BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269101e-143KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978469.11e-105PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6X5Y62e-78WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLK3ZIN11e-107K3ZIN1_SETIT; Uncharacterized protein
STRINGSi026433m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-58AP2 family protein